23S1M13 PCR #7 6/25/19

P7 P8 P9 P10 P11 P12 P13 P14 P15 P16 E52 E53 E54

Procedure

Samples P7 P8 P9 P10 P11 P12 P13 P14 P15 P16 E52 E53 E54 were used in this PCR (polimerase chain reaction) reaction

First A Master Mix of water, 2x mytaq mix, 23S1M13 Primer (concentration: 10 micromolar), 23S2M13 Primer (concentration: 10 micromolar)

Component Volume for 14 reactions(+5% error)
Water 132.3 micoleters
2x mytaq mix 183.75 micoleters
23S1M13 Primer (concentration: 10 micromolar) 14.7 micoleters
23S2M13 Primer (concentration: 10 micromolar) 14.7 micoleters

24 micoleters of this master mix was added to 14 tubes For the 2 negative controls 12.5 micoleters water and 12.5 micoleters mytaq mix were added E2 was used for the positive control

1 microleter of the DNA samples was added to the coresponding tube

The samples were then placed in the thermocycler set to

Step Temperature Duration cycles
1 92°C 3:00 1
2 92°C 0:30 40
3 55°C 1:00 40
4 72°C 0:15 40
5 72°C 5:00 1
6 4°C hold -

these amplified DNA samples were then tested by making a gel

to create the Gel the following steps were taken

2g agarose and 100ml 1X TAE buffer were mixed to make a 2% agarose 100ml gel mix the mix was microwaved and swirled until there were no flakes then 1 microliters Gelgreen was added

the mix was left to cool for 5 minutes then poured into the gel mold the gel was left to harden for 30 minutes

once hardened enough Used TAE buffer was poured into the gel box to cover the mold

5 microliter aliquots of DNA samples P7 P8 P9 P10 P11 P12 P13 P14 P15 P16 E52 E53 E54 and the two controls were made 1 microliter of 5x loading dye was added to each

First 3 microliters of the HyperLadder 100bp was added to the first well of the mold then the DNA samples were each added to the wells in the following order

Ladder P7 P8 P9 Negative Control P10 P11 P12 P13
Ladder P14 P15 P16 Negative Control E52 E53 E54 Positive Control (E2)

The voltage was set to 100V and run for 60 minutes

This is the resulting Gel

06-25-19_23S1M13_Gel9

06-25-19_23S1M13_Gel10

Notes

Written on June 25, 2019